Package: nimbleCarbon 0.2.6

nimbleCarbon: Bayesian Analyses of Radiocarbon Dates with NIMBLE

Provides utility functions and custom probability distribution for Bayesian analyses of radiocarbon dates within the 'nimble' modelling framework. It includes various population growth models, nimbleFunction objects, as well as a suite of functions for prior and posterior predictive checks for demographic inference (Crema and Shoda (2021) <doi:10.1371/journal.pone.0251695>) and other analyses.

Authors:Enrico Crema [aut, cre], Robert Di Napoli [ctb]

nimbleCarbon_0.2.6.tar.gz
nimbleCarbon_0.2.6.zip(r-4.7-any)nimbleCarbon_0.2.6.zip(r-4.6-any)nimbleCarbon_0.2.6.zip(r-4.5-any)
nimbleCarbon_0.2.6.tgz(r-4.6-any)nimbleCarbon_0.2.6.tgz(r-4.5-any)
nimbleCarbon_0.2.6.tar.gz(r-4.7-any)nimbleCarbon_0.2.6.tar.gz(r-4.6-any)
nimbleCarbon_0.2.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nimbleCarbon/json (API)

# Install 'nimbleCarbon' in R:

install.packages('nimbleCarbon', repos = c('https://ercrema.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ercrema/nimblecarbon/issues

Datasets:

intcal20 - IntCal20 radiocarbon age calibration curve for the Northern hemisphere.
marine20 - Marine20 radiocarbon age calibration curve.
shcal20 - IntCal20 radiocarbon age calibration curve for the Southern hemisphere.

On CRAN:

bayesian-inference radiocarbon-dates

6.06 score 19 stars 120 scripts 260 downloads 1 mentions 25 exports 56 dependencies

Last updated from:0dc2591fa3. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	201
source / vignettes	OK	2749
linux-release	OK	176
macos-release	OK	235
macos-oldrel	OK	159
windows-devel	OK	137
windows-release	OK	133
windows-oldrel	OK	118
wasm-release	OK	151

Exports:agreementIndex compare.models dAsymLaplace dDoubleExponentialGrowth dExponentialGrowth dExponentialLogisticGrowth dLogisticExponentialGrowth dLogisticGrowth dLogisticGrowth2 dTrapezoidal interpLin modelPlot pAsymLaplace postHPDplot postPredCor postPredSPD qAsymLaplace rAsymLaplace rDoubleExponentialGrowth rExponentialGrowth rExponentialLogisticGrowth rLogisticExponentialGrowth rLogisticGrowth rLogisticGrowth2 rTrapezoidal

Dependencies:abind class classInt cli coda codetools cpp11 DBI deldir doSNOW e1071 evaluate foreach glue goftest highr igraph iterators KernSmooth knitr lattice lifecycle magrittr Matrix mgcv nimble nlme numDeriv pkgconfig polyclip pracma proxy R6 rcarbon Rcpp rlang rpart s2 sf snow spatstat spatstat.data spatstat.explore spatstat.geom spatstat.linnet spatstat.model spatstat.random spatstat.sparse spatstat.univar spatstat.utils tensor units vctrs wk xfun yaml

An Introduction to NimbleCarbon

Rendered fromnimble_carbon_vignette.Rmdusingknitr::rmarkdown_notangle

Last update: 2021-05-21
Started: 2020-12-30

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate Agreement Indices.	agreementIndex
WAIC-based model comparison	compare.models
Asymmetric Laplace Distribution	dAsymLaplace dAsymLaplace, pAsymLaplace qAsymLaplace qAsymLaplace, rAsymLaplace rAsymLaplace,
Double Exponential Growth Model	dDoubleExponentialGrowth rDoubleExponentialGrowth
Exponential Growth Model	dExponentialGrowth rExponentialGrowth
Exponential-Logistic Growth Model	dExponentialLogisticGrowth rExponentialLogisticGrowth
Logistic-Exponential Growth Model	dLogisticExponentialGrowth rLogisticExponentialGrowth
Logistic Growth Model	dLogisticGrowth rLogisticGrowth
Logistic Growth Model (parametrisation with inflection point)	dLogisticGrowth2 rLogisticGrowth2
Trapezoidal Distribution	dTrapezoidal rTrapezoidal
IntCal20 radiocarbon age calibration curve for the Northern hemisphere.	intcal20
Linear interpolation function	interpLin
Marine20 radiocarbon age calibration curve.	marine20
Plot Growth Models	modelPlot
Plot SPD-based Posterior Predictive Check	plot.spdppc
Plot Marginal Posterior Distribution	postHPDplot
Calculates correlation between observed and posterior generated SPD.	postPredCor
SPD-based Posterior Predictive Check	postPredSPD
IntCal20 radiocarbon age calibration curve for the Southern hemisphere.	shcal20